Not to prod, just a reminder. Currently, it links to first release versions of programs that have seen new releases, like DSAim. It links to 0.01, but I've seen 0.03 from google...
As such, I don't know if I can use the list reliably. I just got my R4 and it's time to put my stuff on it:
The comic viewer
A good IRC client
And emulators (NES, GB/GBC, Genesis, SNES).